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Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides.

Identifieur interne : 000503 ( Main/Exploration ); précédent : 000502; suivant : 000504

Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides.

Auteurs : Mircea Podar [Pays-Bas] ; Joel Turner [États-Unis] ; Leah H. Burdick [États-Unis] ; Dale A. Pelletier [États-Unis]

Source :

RBID : pubmed:32616649

Abstract

Starkeya sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree. Starkeya spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of Starkeya sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.

DOI: 10.1128/MRA.00644-20
PubMed: 32616649
PubMed Central: PMC7330251


Affiliations:


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Le document en format XML

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<i>Starkeya</i>
sp. strain ORNL1 is an alphaproteobacterium isolated from the rhizosphere of an Eastern cottonwood tree.
<i>Starkeya</i>
spp. are physiologically versatile, using a wide range of nutritional and energetic resources and serving important ecological roles in carbon and sulfur cycling. The 6.3-Mb chromosome of
<i>Starkeya</i>
sp. strain ORNL1 was completely sequenced and will help in understanding nutrient cycles.</div>
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<i>Starkeya</i>
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<Reference>
<Citation>J Bacteriol. 1959 Aug;78:197-202</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14441581</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Arch Microbiol. 2001 Feb;175(2):102-11</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11285738</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Commun. 2018 Nov 30;9(1):5114</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">30504855</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Microbiol Resour Announc. 2019 Nov 14;8(46):</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">31727704</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Appl Environ Microbiol. 2016 Aug 30;82(18):5698-708</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27422831</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Bacteriol. 1982 Apr;150(1):46-51</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">6801026</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2012 Jun 15;28(12):1647-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22543367</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Int J Syst Evol Microbiol. 2006 Oct;56(Pt 10):2409-2414</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17012571</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2010 Mar 10;5(3):e9490</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">20224823</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Int J Syst Evol Microbiol. 2000 Sep;50 Pt 5:1797-1802</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11034489</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Bacteriol. 1977 Aug;131(2):389-98</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">885836</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2007 Nov 1;23(21):2947-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17846036</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2008 Aug 15;24(16):1757-64</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18567917</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nucleic Acids Res. 2016 Aug 19;44(14):6614-24</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27342282</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Front Microbiol. 2013 Oct 17;4:304</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24146664</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Can J Microbiol. 1974 Nov;20(11):1577-84</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">4373155</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Biotechnol. 2018 Jul 6;36(7):566-569</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">29979655</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Appl Environ Microbiol. 2008 Apr;74(8):2461-70</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18296538</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2014 Jul 15;30(14):2068-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24642063</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Stand Genomic Sci. 2012 Oct 10;7(1):44-58</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23450099</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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